Index _ | A | B | C | D | E | F | G | I | J | K | M | N | O | P | R | S | T | U | V | X | Y _ _Arrhenius (class in musica._musica._mechanism_configuration) _Branched (class in musica._musica._mechanism_configuration) _Conditions (class in musica._musica._micm) _create_solver() (in module musica._musica._micm) _create_solver_from_mechanism() (in module musica._musica._micm) _create_state() (in module musica._musica._micm) _Emission (class in musica._musica._mechanism_configuration) _FirstOrderLoss (class in musica._musica._mechanism_configuration) _get_micm_version() (in module musica._musica._micm) _is_cuda_available() (in module musica._musica._micm) _Mechanism (class in musica._musica._mechanism_configuration) _micm_solve() (in module musica._musica._micm) _Parser (class in musica._musica._mechanism_configuration) _Phase (class in musica._musica._mechanism_configuration) _PhaseSpecies (class in musica._musica._mechanism_configuration) _Photolysis (class in musica._musica._mechanism_configuration) _print_state() (in module musica._musica._micm) _pybind11_conduit_v1_() (musica._musica._mechanism_configuration._Arrhenius method) (musica._musica._mechanism_configuration._Branched method) (musica._musica._mechanism_configuration._Emission method) (musica._musica._mechanism_configuration._FirstOrderLoss method) (musica._musica._mechanism_configuration._Mechanism method) (musica._musica._mechanism_configuration._Parser method) (musica._musica._mechanism_configuration._Phase method) (musica._musica._mechanism_configuration._PhaseSpecies method) (musica._musica._mechanism_configuration._Photolysis method) (musica._musica._mechanism_configuration._ReactionComponent method) (musica._musica._mechanism_configuration._Reactions method) (musica._musica._mechanism_configuration._ReactionsIterator method) (musica._musica._mechanism_configuration._ReactionType method) (musica._musica._mechanism_configuration._Species method) (musica._musica._mechanism_configuration._Surface method) (musica._musica._mechanism_configuration._TaylorSeries method) (musica._musica._mechanism_configuration._TernaryChemicalActivation method) (musica._musica._mechanism_configuration._Troe method) (musica._musica._mechanism_configuration._Tunneling method) (musica._musica._mechanism_configuration._UserDefined method) (musica._musica._mechanism_configuration._Version method) (musica._musica._micm._Conditions method) (musica._musica._micm._SolverResult method) (musica._musica._micm._SolverResultsStats method) (musica._musica._micm._SolverState method) (musica._musica._micm._SolverType method) (musica._musica._micm._State method) (musica._musica._micm.MICM method) (musica._musica._micm.VectorConditions method) _ReactionComponent (class in musica._musica._mechanism_configuration) _Reactions (class in musica._musica._mechanism_configuration) _ReactionsIterator (class in musica._musica._mechanism_configuration) _ReactionType (class in musica._musica._mechanism_configuration) _SolverResult (class in musica._musica._micm) _SolverResultsStats (class in musica._musica._micm) _SolverState (class in musica._musica._micm) _SolverType (class in musica._musica._micm) _Species (class in musica._musica._mechanism_configuration) _species_ordering() (in module musica._musica._micm) _State (class in musica._musica._micm) _Surface (class in musica._musica._mechanism_configuration) _TaylorSeries (class in musica._musica._mechanism_configuration) _TernaryChemicalActivation (class in musica._musica._mechanism_configuration) _Troe (class in musica._musica._mechanism_configuration) _Tunneling (class in musica._musica._mechanism_configuration) _user_defined_rate_parameters_ordering() (in module musica._musica._micm) _UserDefined (class in musica._musica._mechanism_configuration) _vector_size() (in module musica._musica._micm) _Version (class in musica._musica._mechanism_configuration) A A (musica._musica._mechanism_configuration._Arrhenius attribute) (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) (musica._musica._mechanism_configuration._Tunneling attribute) (musica._musica._mechanism_configuration._Tunneling property) a0 (musica._musica._mechanism_configuration._Branched attribute) (musica._musica._mechanism_configuration._Branched property) accepted (musica._musica._micm._SolverResultsStats property) AcceptingUnconvergedIntegration (musica._musica._micm._SolverState attribute) air_density (musica._musica._micm._Conditions attribute) (musica._musica._micm._Conditions property) alkoxy_products (musica._musica._mechanism_configuration._Branched attribute) (musica._musica._mechanism_configuration._Branched property) append() (musica._musica._micm.VectorConditions method) arrhenius (musica._musica._mechanism_configuration._Reactions property) Arrhenius (musica._musica._mechanism_configuration._ReactionType attribute) B B (musica._musica._mechanism_configuration._Arrhenius attribute) (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) (musica._musica._mechanism_configuration._Tunneling attribute) (musica._musica._mechanism_configuration._Tunneling property) backward_euler (musica._musica._micm._SolverType attribute) backward_euler_standard_order (musica._musica._micm._SolverType attribute) branched (musica._musica._mechanism_configuration._Reactions property) Branched (musica._musica._mechanism_configuration._ReactionType attribute) C C (musica._musica._mechanism_configuration._Arrhenius attribute) (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) (musica._musica._mechanism_configuration._Tunneling attribute) (musica._musica._mechanism_configuration._Tunneling property) clear() (musica._musica._micm.VectorConditions method) coefficient (musica._musica._mechanism_configuration._ReactionComponent attribute) (musica._musica._mechanism_configuration._ReactionComponent property) concentration_strides() (musica._musica._micm._State method) concentrations (musica._musica._micm._State property) conditions (musica._musica._micm._State property) constant_concentration_mol_m3 (musica._musica._mechanism_configuration._Species attribute) (musica._musica._mechanism_configuration._Species property) constant_mixing_ratio_mol_mol (musica._musica._mechanism_configuration._Species attribute) (musica._musica._mechanism_configuration._Species property) Converged (musica._musica._micm._SolverState attribute) ConvergenceExceededMaxSteps (musica._musica._micm._SolverState attribute) cuda_rosenbrock (musica._musica._micm._SolverType attribute) D D (musica._musica._mechanism_configuration._Arrhenius attribute) (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) decompositions (musica._musica._micm._SolverResultsStats property) diffusion_coefficient_m2_s (musica._musica._mechanism_configuration._PhaseSpecies attribute) (musica._musica._mechanism_configuration._PhaseSpecies property) E E (musica._musica._mechanism_configuration._Arrhenius attribute) (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) emission (musica._musica._mechanism_configuration._Reactions property) Emission (musica._musica._mechanism_configuration._ReactionType attribute) export() (musica._musica._mechanism_configuration._Mechanism method) extend() (musica._musica._micm.VectorConditions method) F Fc (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) final_time (musica._musica._micm._SolverResultsStats property) first_order_loss (musica._musica._mechanism_configuration._Reactions property) FirstOrderLoss (musica._musica._mechanism_configuration._ReactionType attribute) function_calls (musica._musica._micm._SolverResultsStats property) G gas_phase (musica._musica._mechanism_configuration._Arrhenius attribute) (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._Branched attribute) (musica._musica._mechanism_configuration._Branched property) (musica._musica._mechanism_configuration._Emission attribute) (musica._musica._mechanism_configuration._Emission property) (musica._musica._mechanism_configuration._FirstOrderLoss attribute) (musica._musica._mechanism_configuration._FirstOrderLoss property) (musica._musica._mechanism_configuration._Photolysis attribute) (musica._musica._mechanism_configuration._Photolysis property) (musica._musica._mechanism_configuration._Surface attribute) (musica._musica._mechanism_configuration._Surface property) (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) (musica._musica._mechanism_configuration._Tunneling attribute) (musica._musica._mechanism_configuration._Tunneling property) (musica._musica._mechanism_configuration._UserDefined attribute) (musica._musica._mechanism_configuration._UserDefined property) gas_phase_products (musica._musica._mechanism_configuration._Surface attribute) (musica._musica._mechanism_configuration._Surface property) gas_phase_species (musica._musica._mechanism_configuration._Surface attribute) (musica._musica._mechanism_configuration._Surface property) I InfDetected (musica._musica._micm._SolverState attribute) insert() (musica._musica._micm.VectorConditions method) is_third_body (musica._musica._mechanism_configuration._Species attribute) (musica._musica._mechanism_configuration._Species property) J jacobian_updates (musica._musica._micm._SolverResultsStats property) K k0_A (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) k0_B (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) k0_C (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) kinf_A (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) kinf_B (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) kinf_C (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) M major (musica._musica._mechanism_configuration._Version property) MICM (class in musica._musica._micm) minor (musica._musica._mechanism_configuration._Version property) module musica._musica._mechanism_configuration musica._musica._micm musica.carma musica.micm musica.tuvx molecular_weight_kg_mol (musica._musica._mechanism_configuration._Species attribute) (musica._musica._mechanism_configuration._Species property) musica._musica._mechanism_configuration module musica._musica._micm module musica.carma module musica.micm module musica.tuvx module N n (musica._musica._mechanism_configuration._Branched attribute) (musica._musica._mechanism_configuration._Branched property) N (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) name (musica._musica._mechanism_configuration._Arrhenius attribute) (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._Branched attribute) (musica._musica._mechanism_configuration._Branched property) (musica._musica._mechanism_configuration._Emission attribute) (musica._musica._mechanism_configuration._Emission property) (musica._musica._mechanism_configuration._FirstOrderLoss attribute) (musica._musica._mechanism_configuration._FirstOrderLoss property) (musica._musica._mechanism_configuration._Mechanism attribute) (musica._musica._mechanism_configuration._Mechanism property) (musica._musica._mechanism_configuration._Phase attribute) (musica._musica._mechanism_configuration._Phase property) (musica._musica._mechanism_configuration._PhaseSpecies attribute) (musica._musica._mechanism_configuration._PhaseSpecies property) (musica._musica._mechanism_configuration._Photolysis attribute) (musica._musica._mechanism_configuration._Photolysis property) (musica._musica._mechanism_configuration._ReactionType property) (musica._musica._mechanism_configuration._Species attribute) (musica._musica._mechanism_configuration._Species property) (musica._musica._mechanism_configuration._Surface attribute) (musica._musica._mechanism_configuration._Surface property) (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) (musica._musica._mechanism_configuration._Tunneling attribute) (musica._musica._mechanism_configuration._Tunneling property) (musica._musica._mechanism_configuration._UserDefined attribute) (musica._musica._mechanism_configuration._UserDefined property) (musica._musica._micm._SolverState property) (musica._musica._micm._SolverType property) NaNDetected (musica._musica._micm._SolverState attribute) nitrate_products (musica._musica._mechanism_configuration._Branched attribute) (musica._musica._mechanism_configuration._Branched property) NotYetCalled (musica._musica._micm._SolverState attribute) number_of_grid_cells() (musica._musica._micm._State method) number_of_steps (musica._musica._micm._SolverResultsStats property) O other_properties (musica._musica._mechanism_configuration._Arrhenius attribute) (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._Branched attribute) (musica._musica._mechanism_configuration._Branched property) (musica._musica._mechanism_configuration._Emission attribute) (musica._musica._mechanism_configuration._Emission property) (musica._musica._mechanism_configuration._FirstOrderLoss attribute) (musica._musica._mechanism_configuration._FirstOrderLoss property) (musica._musica._mechanism_configuration._Phase attribute) (musica._musica._mechanism_configuration._Phase property) (musica._musica._mechanism_configuration._PhaseSpecies attribute) (musica._musica._mechanism_configuration._PhaseSpecies property) (musica._musica._mechanism_configuration._Photolysis attribute) (musica._musica._mechanism_configuration._Photolysis property) (musica._musica._mechanism_configuration._ReactionComponent attribute) (musica._musica._mechanism_configuration._ReactionComponent property) (musica._musica._mechanism_configuration._Species attribute) (musica._musica._mechanism_configuration._Species property) (musica._musica._mechanism_configuration._Surface attribute) (musica._musica._mechanism_configuration._Surface property) (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) (musica._musica._mechanism_configuration._Tunneling attribute) (musica._musica._mechanism_configuration._Tunneling property) (musica._musica._mechanism_configuration._UserDefined attribute) (musica._musica._mechanism_configuration._UserDefined property) P parse() (musica._musica._mechanism_configuration._Parser method) parse_and_convert_v0() (musica._musica._mechanism_configuration._Parser method) patch (musica._musica._mechanism_configuration._Version property) phases (musica._musica._mechanism_configuration._Mechanism attribute) (musica._musica._mechanism_configuration._Mechanism property) photolysis (musica._musica._mechanism_configuration._Reactions property) Photolysis (musica._musica._mechanism_configuration._ReactionType attribute) pop() (musica._musica._micm.VectorConditions method) pressure (musica._musica._micm._Conditions attribute) (musica._musica._micm._Conditions property) products (musica._musica._mechanism_configuration._Arrhenius attribute) (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._Emission attribute) (musica._musica._mechanism_configuration._Emission property) (musica._musica._mechanism_configuration._Photolysis attribute) (musica._musica._mechanism_configuration._Photolysis property) (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) (musica._musica._mechanism_configuration._Tunneling attribute) (musica._musica._mechanism_configuration._Tunneling property) (musica._musica._mechanism_configuration._UserDefined attribute) (musica._musica._mechanism_configuration._UserDefined property) R reactants (musica._musica._mechanism_configuration._Arrhenius attribute) (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._Branched attribute) (musica._musica._mechanism_configuration._Branched property) (musica._musica._mechanism_configuration._FirstOrderLoss attribute) (musica._musica._mechanism_configuration._FirstOrderLoss property) (musica._musica._mechanism_configuration._Photolysis attribute) (musica._musica._mechanism_configuration._Photolysis property) (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) (musica._musica._mechanism_configuration._TernaryChemicalActivation attribute) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe attribute) (musica._musica._mechanism_configuration._Troe property) (musica._musica._mechanism_configuration._Tunneling attribute) (musica._musica._mechanism_configuration._Tunneling property) (musica._musica._mechanism_configuration._UserDefined attribute) (musica._musica._mechanism_configuration._UserDefined property) reaction_probability (musica._musica._mechanism_configuration._Surface attribute) (musica._musica._mechanism_configuration._Surface property) reactions (musica._musica._mechanism_configuration._Mechanism attribute) (musica._musica._mechanism_configuration._Mechanism property) (musica._musica._mechanism_configuration._Reactions attribute) rejected (musica._musica._micm._SolverResultsStats property) RepeatedlySingularMatrix (musica._musica._micm._SolverState attribute) rosenbrock (musica._musica._micm._SolverType attribute) rosenbrock_standard_order (musica._musica._micm._SolverType attribute) Running (musica._musica._micm._SolverState attribute) S scaling_factor (musica._musica._mechanism_configuration._Emission attribute) (musica._musica._mechanism_configuration._Emission property) (musica._musica._mechanism_configuration._FirstOrderLoss attribute) (musica._musica._mechanism_configuration._FirstOrderLoss property) (musica._musica._mechanism_configuration._Photolysis attribute) (musica._musica._mechanism_configuration._Photolysis property) (musica._musica._mechanism_configuration._UserDefined attribute) (musica._musica._mechanism_configuration._UserDefined property) serialize() (musica._musica._mechanism_configuration._Arrhenius method) (musica._musica._mechanism_configuration._Branched method) (musica._musica._mechanism_configuration._Emission method) (musica._musica._mechanism_configuration._FirstOrderLoss method) (musica._musica._mechanism_configuration._Mechanism method) (musica._musica._mechanism_configuration._Phase method) (musica._musica._mechanism_configuration._PhaseSpecies method) (musica._musica._mechanism_configuration._Photolysis method) (musica._musica._mechanism_configuration._ReactionComponent method) (musica._musica._mechanism_configuration._Species method) (musica._musica._mechanism_configuration._Surface method) (musica._musica._mechanism_configuration._TaylorSeries method) (musica._musica._mechanism_configuration._TernaryChemicalActivation method) (musica._musica._mechanism_configuration._Troe method) (musica._musica._mechanism_configuration._Tunneling method) (musica._musica._mechanism_configuration._UserDefined method) solves (musica._musica._micm._SolverResultsStats property) species (musica._musica._mechanism_configuration._Mechanism attribute) (musica._musica._mechanism_configuration._Mechanism property) (musica._musica._mechanism_configuration._Phase attribute) (musica._musica._mechanism_configuration._Phase property) species_name (musica._musica._mechanism_configuration._ReactionComponent attribute) (musica._musica._mechanism_configuration._ReactionComponent property) state (musica._musica._micm._SolverResult property) stats (musica._musica._micm._SolverResult property) StepSizeTooSmall (musica._musica._micm._SolverState attribute) surface (musica._musica._mechanism_configuration._Reactions property) Surface (musica._musica._mechanism_configuration._ReactionType attribute) T taylor_coefficients (musica._musica._mechanism_configuration._TaylorSeries attribute) (musica._musica._mechanism_configuration._TaylorSeries property) taylor_series (musica._musica._mechanism_configuration._Reactions property) TaylorSeries (musica._musica._mechanism_configuration._ReactionType attribute) temperature (musica._musica._micm._Conditions attribute) (musica._musica._micm._Conditions property) ternary_chemical_activation (musica._musica._mechanism_configuration._Reactions property) TernaryChemicalActivation (musica._musica._mechanism_configuration._ReactionType attribute) to_string() (musica._musica._mechanism_configuration._Version method) troe (musica._musica._mechanism_configuration._Reactions property) Troe (musica._musica._mechanism_configuration._ReactionType attribute) tunneling (musica._musica._mechanism_configuration._Reactions property) Tunneling (musica._musica._mechanism_configuration._ReactionType attribute) type (musica._musica._mechanism_configuration._Arrhenius property) (musica._musica._mechanism_configuration._Branched property) (musica._musica._mechanism_configuration._Emission property) (musica._musica._mechanism_configuration._FirstOrderLoss property) (musica._musica._mechanism_configuration._Photolysis property) (musica._musica._mechanism_configuration._Surface property) (musica._musica._mechanism_configuration._TaylorSeries property) (musica._musica._mechanism_configuration._TernaryChemicalActivation property) (musica._musica._mechanism_configuration._Troe property) (musica._musica._mechanism_configuration._Tunneling property) (musica._musica._mechanism_configuration._UserDefined property) U user_defined (musica._musica._mechanism_configuration._Reactions property) user_defined_rate_parameter_strides() (musica._musica._micm._State method) user_defined_rate_parameters (musica._musica._micm._State property) UserDefined (musica._musica._mechanism_configuration._ReactionType attribute) V value (musica._musica._mechanism_configuration._ReactionType property) (musica._musica._micm._SolverState property) (musica._musica._micm._SolverType property) VectorConditions (class in musica._musica._micm) version (musica._musica._mechanism_configuration._Mechanism attribute) (musica._musica._mechanism_configuration._Mechanism property) X X (musica._musica._mechanism_configuration._Branched attribute) (musica._musica._mechanism_configuration._Branched property) Y Y (musica._musica._mechanism_configuration._Branched attribute) (musica._musica._mechanism_configuration._Branched property)