Detailed Description

Initializes hydrography from z-coordinate climatology files.

Functions/Subroutines
subroutine, public	mom_initialize_tracer_from_z (h, tr, G, GV, US, PF, src_file, src_var_nam, src_var_unit_conversion, src_var_record, homogenize, useALEremapping, remappingScheme, src_var_gridspec)
	Initializes a tracer from a z-space data file. More...

Variables
character(len=40)	mdl = "MOM_tracer_initialization_from_Z"
	This module's name. More...

Function/Subroutine Documentation

◆ mom_initialize_tracer_from_z()

subroutine, public mom_tracer_initialization_from_z::mom_initialize_tracer_from_z	(	real, dimension(szi_(g),szj_(g),szk_(g)), intent(in)	h,
		real, dimension(:,:,:), pointer	tr,
		type(ocean_grid_type), intent(inout)	G,
		type(verticalgrid_type), intent(in)	GV,
		type(unit_scale_type), intent(in)	US,
		type(param_file_type), intent(in)	PF,
		character(len=*), intent(in)	src_file,
		character(len=*), intent(in)	src_var_nam,
		real, intent(in), optional	src_var_unit_conversion,
		integer, intent(in), optional	src_var_record,
		logical, intent(in), optional	homogenize,
		logical, intent(in), optional	useALEremapping,
		character(len=*), intent(in), optional	remappingScheme,
		character(len=*), intent(in), optional	src_var_gridspec
	)

Initializes a tracer from a z-space data file.

Parameters

[in,out]	g	Ocean grid structure.
[in]	gv	Ocean vertical grid structure.
[in]	us	A dimensional unit scaling type
[in]	h	Layer thickness [H ~> m or kg m-2].
	tr	Pointer to array to be initialized
[in]	pf	parameter file
[in]	src_file	source filename
[in]	src_var_nam	variable name in file
[in]	src_var_unit_conversion	optional multiplicative unit conversion
[in]	src_var_record	record to read for multiple time-level files
[in]	homogenize	optionally homogenize to mean value
[in]	usealeremapping	to remap or not (optional)
[in]	remappingscheme	remapping scheme to use.
[in]	src_var_gridspec	Source variable name in a gridspec file. This is not implemented yet.

Definition at line 49 of file MOM_tracer_initialization_from_Z.F90.

   type(ocean_grid_type),      intent(inout) :: G   !< Ocean grid structure.
   type(verticalGrid_type),    intent(in)    :: GV  !< Ocean vertical grid structure.
   type(unit_scale_type),      intent(in)    :: US  !< A dimensional unit scaling type
   real, dimension(SZI_(G),SZJ_(G),SZK_(G)), &
                               intent(in)    :: h   !< Layer thickness [H ~> m or kg m-2].
   real, dimension(:,:,:),     pointer       :: tr  !< Pointer to array to be initialized
   type(param_file_type),      intent(in)    :: PF  !< parameter file
   character(len=*),           intent(in)    :: src_file !< source filename
   character(len=*),           intent(in)    :: src_var_nam !< variable name in file
   real,             optional, intent(in)    :: src_var_unit_conversion !< optional multiplicative unit conversion
   integer,          optional, intent(in)    :: src_var_record  !< record to read for multiple time-level files
   logical,          optional, intent(in)    :: homogenize !< optionally homogenize to mean value
   logical,          optional, intent(in)    :: useALEremapping !< to remap or not (optional)
   character(len=*), optional, intent(in)    :: remappingScheme !< remapping scheme to use.
   character(len=*), optional, intent(in)    :: src_var_gridspec !< Source variable name in a gridspec file.
                                                                 !! This is not implemented yet.
   ! Local variables
   real :: land_fill = 0.0
   character(len=200) :: inputdir ! The directory where NetCDF input files are.
   character(len=200) :: mesg
   real               :: convert
   integer            :: recnum
   character(len=10)  :: remapScheme
   logical            :: homog,useALE
  
   ! This include declares and sets the variable "version".
 # include "version_variable.h"
   character(len=40)  :: mdl = "MOM_initialize_tracers_from_Z" ! This module's name.
  
   integer :: is, ie, js, je, nz ! compute domain indices
   integer :: isd, ied, jsd, jed ! data domain indices
   integer :: i, j, k, kd
   real, allocatable, dimension(:,:,:), target :: tr_z, mask_z
   real, allocatable, dimension(:), target :: z_edges_in, z_in
  
   ! Local variables for ALE remapping
   real, dimension(:,:,:), allocatable :: hSrc ! Source thicknesses [H ~> m or kg m-2].
   real, dimension(:), allocatable :: h1 ! A 1-d column of source thicknesses [Z ~> m].
   real :: zTopOfCell, zBottomOfCell, z_bathy  ! Heights [Z ~> m].
   type(remapping_CS) :: remapCS ! Remapping parameters and work arrays
  
   real :: missing_value
   integer :: nPoints
   integer :: id_clock_routine, id_clock_ALE
   logical :: reentrant_x, tripolar_n
  
   id_clock_routine = cpu_clock_id('(Initialize tracer from Z)', grain=clock_routine)
   id_clock_ale = cpu_clock_id('(Initialize tracer from Z) ALE', grain=clock_loop)
  
   call cpu_clock_begin(id_clock_routine)
  
   is = g%isc ; ie = g%iec ; js = g%jsc ; je = g%jec ; nz = g%ke
   isd = g%isd ; ied = g%ied ; jsd = g%jsd ; jed = g%jed
  
   call calltree_enter(trim(mdl)//"(), MOM_state_initialization.F90")
  
   call get_param(pf, mdl, "Z_INIT_HOMOGENIZE", homog, &
                  "If True, then horizontally homogenize the interpolated "//&
                  "initial conditions.", default=.false.)
   call get_param(pf, mdl, "Z_INIT_ALE_REMAPPING", useale, &
                  "If True, then remap straight to model coordinate from file.",&
                  default=.true.)
   call get_param(pf, mdl, "Z_INIT_REMAPPING_SCHEME", remapscheme, &
                  "The remapping scheme to use if using Z_INIT_ALE_REMAPPING is True.", &
                  default="PLM")
  
   ! These are model grid properties, but being applied to the data grid for now.
   ! need to revisit this (mjh)
   reentrant_x = .false. ;  call get_param(pf, mdl, "REENTRANT_X", reentrant_x,default=.true.)
   tripolar_n = .false. ;  call get_param(pf, mdl, "TRIPOLAR_N", tripolar_n, default=.false.)
  
   if (PRESENT(homogenize)) homog=homogenize
   if (PRESENT(usealeremapping)) useale=usealeremapping
   if (PRESENT(remappingscheme)) remapscheme=remappingscheme
   recnum=1
   if (PRESENT(src_var_record)) recnum = src_var_record
   convert=1.0
   if (PRESENT(src_var_unit_conversion)) convert = src_var_unit_conversion
  
   call horiz_interp_and_extrap_tracer(src_file, src_var_nam, convert, recnum, &
        g, tr_z, mask_z, z_in, z_edges_in, missing_value, reentrant_x, tripolar_n, &
        homog, m_to_z=us%m_to_Z)
  
   kd = size(z_edges_in,1)-1
   call pass_var(tr_z,g%Domain)
   call pass_var(mask_z,g%Domain)
  
 ! Done with horizontal interpolation.
 ! Now remap to model coordinates
   if (useale) then
     call cpu_clock_begin(id_clock_ale)
     ! First we reserve a work space for reconstructions of the source data
     allocate( h1(kd) )
     allocate( hsrc(isd:ied,jsd:jed,kd) )
     call initialize_remapping( remapcs, remapscheme, boundary_extrapolation=.false. ) ! Data for reconstructions
     ! Next we initialize the regridding package so that it knows about the target grid
  
     do j = js, je ; do i = is, ie
       if (g%mask2dT(i,j)>0.) then
         ! Build the source grid
         ztopofcell = 0. ; zbottomofcell = 0. ; npoints = 0
         z_bathy = g%bathyT(i,j)
         do k = 1, kd
           if (mask_z(i,j,k) > 0.) then
             zbottomofcell = -min( z_edges_in(k+1), z_bathy )
           elseif (k>1) then
             zbottomofcell = -z_bathy
           endif
           h1(k) = ztopofcell - zbottomofcell
           if (h1(k)>0.) npoints = npoints + 1
           ztopofcell = zbottomofcell ! Bottom becomes top for next value of k
         enddo
         h1(kd) = h1(kd) + ( ztopofcell + z_bathy ) ! In case data is deeper than model
       else
         tr(i,j,:) = 0.
       endif ! mask2dT
       hsrc(i,j,:) = gv%Z_to_H * h1(:)
     enddo ; enddo
  
     call ale_remap_scalar(remapcs, g, gv, kd, hsrc, tr_z, h, tr, all_cells=.false. )
  
     deallocate( hsrc )
     deallocate( h1 )
  
     do k=1,nz
       call mystats(tr(:,:,k), missing_value, is, ie, js, je, k, 'Tracer from ALE()')
     enddo
     call cpu_clock_end(id_clock_ale)
   endif ! useALEremapping
  
 ! Fill land values
   do k=1,nz ; do j=js,je ; do i=is,ie
     if (tr(i,j,k) == missing_value) then
       tr(i,j,k)=land_fill
     endif
   enddo ; enddo ; enddo
  
   call calltree_leave(trim(mdl)//'()')
   call cpu_clock_end(id_clock_routine)
  

References mom_ale::ale_remap_scalar(), mom_error_handler::calltree_enter(), mom_error_handler::calltree_leave(), mdl, and mom_horizontal_regridding::mystats().

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Variable Documentation

◆ mdl

character(len=40) mom_tracer_initialization_from_z::mdl = "MOM_tracer_initialization_from_Z"

private

This module's name.

Definition at line 41 of file MOM_tracer_initialization_from_Z.F90.

41 character(len=40) :: mdl = "MOM_tracer_initialization_from_Z" !< This module's name.

Referenced by mom_initialize_tracer_from_z().

Detailed Description

Functions/Subroutines

Variables

Function/Subroutine Documentation

◆ mom_initialize_tracer_from_z()

Variable Documentation

◆ mdl