Timeseries Generation#
This tutorial illustrates how to use the History class to convert CESM (versions 1, 2, and 3) output history files to timeseries files.
[1]:
%load_ext autoreload
%autoreload 2
import os
os.chdir('/glade/u/home/fengzhu/Github/x4c/docsrc/notebooks')
import numpy as np
import x4c
print(x4c.__version__)
2024.8.5.15
[4]:
dirpath = '/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2'
case = x4c.History(dirpath, casename='b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2')
>>> case.root_dir: /glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2
>>> case.casename: b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2
>>> case.comps_info: {'atm': ('cam', 'h0'), 'ocn': ('pop', 'h'), 'lnd': ('clm2', 'h0'), 'ice': ('cice', 'h'), 'rof': ('rtm', 'h0')}
>>> case.paths["atm"] created
>>> case.paths["ocn"] created
>>> case.paths["lnd"] created
>>> case.paths["ice"] created
>>> case.paths["rof"] created
>>> case.vns["atm"] created
>>> case.vns["ocn"] created
>>> case.vns["lnd"] created
>>> case.vns["ice"] created
>>> case.vns["rof"] created
[31]:
path_pattern = 'comp/hist/casename.mdl.h_str.date.nc'
paths = x4c.utils.find_paths(case.root_dir, path_pattern, comp='ocn', mdl='pop', h_str='h', verbose=True,
avoid_list=['nday1', 'once'])
path_pattern: ocn/*/*.pop.h.*[0-9].nc
[5]:
case.get_paths('ocn', timespan=(5501, 5550))
[5]:
['/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5501-01.nc',
'/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5501-02.nc',
'/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5501-03.nc',
'/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5501-04.nc',
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'/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5501-07.nc',
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'/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5550-07.nc',
'/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5550-08.nc',
'/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5550-09.nc',
'/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5550-10.nc',
'/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5550-11.nc',
'/glade/campaign/univ/uazn0034/fengzhu/CESM_output/archive/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2/ocn/hist/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2.pop.h.5550-12.nc']
[7]:
%%time
case.gen_ts(
# comps={'atm': ['TS', 'T'], 'ocn': ['SALT']},
comps={'atm': ['TS']},
output_dirpath='/glade/campaign/univ/uazn0034/fengzhu/CESM_output/timeseries',
scratch_dirpath=f'/glade/derecho/scratch/fengzhu/x4c/gen_ts/test',
timespan=(5501, 5550),
timestep=50,
nproc=1,
overwrite=True,
compression=1,
)
>>> Processing component: atm
>>> Processing timespan: (5501, 5550)
Spliting history files: 100%|██████████| 600/600 [02:17<00:00, 4.36it/s]
Merging variables: 100%|██████████| 1/1 [00:02<00:00, 2.87s/it]
Moving generated files
from: /glade/derecho/scratch/fengzhu/x4c/gen_ts/test
Moving generated filesiv/uazn0034/fengzhu/CESM_output/timeseries: 0it [00:00, ?it/s]
from: /glade/derecho/scratch/fengzhu/x4c/gen_ts/test
to: /glade/campaign/univ/uazn0034/fengzhu/CESM_output/timeseries: 0it [00:00, ?it/s]
CPU times: user 1.02 s, sys: 391 ms, total: 1.41 s
Wall time: 2min 30s
[11]:
%%time
case.gen_ts(
# comps={'atm': ['TS', 'T'], 'ocn': ['SALT']},
comps={'atm': ['TS'], 'ocn': ['SSH']},
output_dirpath=os.path.join('/glade/campaign/univ/uazn0034/fengzhu/CESM_output/timeseries', case.casename),
scratch_dirpath=f'/glade/derecho/scratch/fengzhu/x4c/gen_ts/test',
timespan=(5501, 5501),
timestep=1,
nproc=1,
overwrite=True,
compression=1,
)
>>> Processing component: atm
>>> Processing timespan: (5501, 5501)
Spliting history files: 100%|██████████| 12/12 [00:00<00:00, 15.09it/s]
Merging variables: 100%|██████████| 1/1 [00:00<00:00, 10.46it/s]
>>> Processing component: ocn
>>> Processing timespan: (5501, 5501)
Spliting history files: 100%|██████████| 12/12 [00:03<00:00, 3.10it/s]
Merging variables: 100%|██████████| 1/1 [00:00<00:00, 1.63it/s]
>>> Postprocessing component: atm
Moving generated files
from: /glade/derecho/scratch/fengzhu/x4c/gen_ts/test
to: /glade/campaign/univ/uazn0034/fengzhu/CESM_output/timeseries/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2
Moving generated files [00:00<?, ?it/s]
from: /glade/derecho/scratch/fengzhu/x4c/gen_ts/test
to: /glade/campaign/univ/uazn0034/fengzhu/CESM_output/timeseries/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2
: 100%|██████████| 1/1 [00:00<00:00, 706.47it/s]
>>> Postprocessing component: ocn
Moving generated files
from: /glade/derecho/scratch/fengzhu/x4c/gen_ts/test
to: /glade/campaign/univ/uazn0034/fengzhu/CESM_output/timeseries/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2
Moving generated files [00:00<?, ?it/s]
from: /glade/derecho/scratch/fengzhu/x4c/gen_ts/test
to: /glade/campaign/univ/uazn0034/fengzhu/CESM_output/timeseries/b.e13.B1850C5.ne16_g16.icesm131_d18O_fixer.Miocene.1.5xCO2.branch_461.2
: 100%|██████████| 1/1 [00:00<00:00, 753.02it/s]
CPU times: user 73.5 ms, sys: 152 ms, total: 225 ms
Wall time: 5.69 s
[ ]: