Stream: python-questions
Topic: cartopy import error
Matt Long (Jun 09 2020 at 13:29):
I recently updated my environment and get the following error on importing cartopy:
--------------------------------------------------------------------------- ImportError Traceback (most recent call last) <ipython-input-1-b0688681af7f> in <module> 12 import matplotlib.pyplot as plt 13 ---> 14 import cartopy.crs as ccrs 15 from cartopy.util import add_cyclic_point 16 import cmocean /glade/work/mclong/miniconda3/envs/krill/lib/python3.7/site-packages/cartopy/__init__.py in <module> 94 # Commonly used sub-modules. Imported here to provide end-user 95 # convenience. ---> 96 import cartopy.crs 97 import cartopy.feature # noqa: F401 (flake8 = unused import) /glade/work/mclong/miniconda3/envs/krill/lib/python3.7/site-packages/cartopy/crs.py in <module> 34 import six 35 ---> 36 from cartopy._crs import (CRS, Geodetic, Globe, PROJ4_VERSION, 37 WGS84_SEMIMAJOR_AXIS, WGS84_SEMIMINOR_AXIS) 38 from cartopy._crs import Geocentric # noqa: F401 (flake8 = unused import) ImportError: libproj.so.19: cannot open shared object file: No such file or directory
Has anyone encountered this? Solutions?
Anderson Banihirwe (Jun 09 2020 at 13:42):
I am on somewhat up-to-date versions of cartopy and proj and things seem to work fine ( I tested the import)
$ conda list cartopy # packages in environment at /glade/work/abanihi/softwares/miniconda3/envs/analysis: # # Name Version Build Channel cartopy 0.18.0 py37h4b180d9_0 conda-forge abanihi at casper26 in ~ $ conda list proj # packages in environment at /glade/work/abanihi/softwares/miniconda3/envs/analysis: # # Name Version Build Channel proj 7.0.0 h966b41f_4 conda-forge pyproj 2.6.1.post1 py37h34dd122_0 conda-forge
I am curious... Did you pin your proj and pyproj versions? They are a little outdated:
abanihi at casper26 in ~ $ conda list cartopy # packages in environment at /glade/work/mclong/miniconda3/envs/krill: # # Name Version Build Channel cartopy 0.18.0 py37h4b180d9_0 conda-forge abanihi at casper26 in ~ $ conda list proj # packages in environment at /glade/work/mclong/miniconda3/envs/krill: # # Name Version Build Channel proj 6.3.1 hc80f0dc_1 conda-forge pyproj 2.5.0 py37he3cd046_1 conda-forge
Matt Long (Jun 09 2020 at 13:46):
no, I did not pin my proj and pyproj versions, but I bet that this is the problem. I don't include them in my specific list of dependencies.
Matt Long (Jun 09 2020 at 13:48):
Here's the environment: https://github.com/matt-long/krill-cesm-le/blob/master/environment/environment.yml
Matt Long (Jun 09 2020 at 13:48):
Can you suggest a modification?
Anderson Banihirwe (Jun 09 2020 at 13:48):
Can you suggest a modification?
I am looking into it
Anderson Banihirwe (Jun 09 2020 at 13:49):
i am inspecting the environment to see what packages may be restricting pyproj and proj to be updated
Matt Long (Jun 09 2020 at 13:50):
many thanks!
Anderson Banihirwe (Jun 09 2020 at 13:51):
Anytime!
Anderson Banihirwe (Jun 09 2020 at 13:51):
Are you using this environment file: https://github.com/matt-long/krill-cesm-le/blob/master/environment/environment.yml?
Matt Long (Jun 09 2020 at 13:52):
yes
Anderson Banihirwe (Jun 09 2020 at 14:02):
I happened to have a krill environment. I tried updating it with conda env update -f environment/environment.yml and I noticed that proj and pyproj versions didn't change i.e. before and after the update:
$ conda list proj # packages in environment at /glade/work/abanihi/softwares/miniconda3/envs/krill: # # Name Version Build Channel proj 7.0.0 h966b41f_3 conda-forge pyproj 2.6.0 py37h34dd122_1 conda-forge
I'd recommend updating the environment file with the following:
- cartopy >= 0.18.0 - proj >= 7.0.0 - pyproj >= 2.6.0
Matt Long (Jun 09 2020 at 14:05):
thanks, I'll try it
Matt Long (Jun 09 2020 at 14:58):
this seems to have fixed my import error
Matt Long (Jun 09 2020 at 14:58):
thanks!
Anderson Banihirwe (Jun 09 2020 at 15:00):
Awesome :tada:
Last updated: Jan 30 2022 at 12:01 UTC