Anderson Banihirwe (Jan 26 2022 at 19:12): Anderson Banihirwe (Jan 26 2022 at 19:12):It appears that qsub isn't available in $PATH when using the jupyterhub. This results in a couple of issues including dask-jobqueue not being able to submit jobs on Cheyenne. I can confirm that I am not the only one affected by this issue (Cc @Mira Berdahl )
@Jared Baker, are you aware of this issue? Am I missing something?
(playground) abanihi@cheyenne2:~> whereis qsub
qsub: /opt/pbs/bin/qsub /usr/share/man/man1p/qsub.1p.gz
(playground) abanihi@cheyenne2:~> which qsub
which: no qsub in (/glade/u/home/abanihi/go:/glade/u/home/abanihi/go:/glade/u/home/abanihi/go:/glade/u/apps/ch/opt/git/2.33.1/gnu/9.1.0/bin:/glade/u/apps/ch/opt/ncarcompilers/0.5.0/intel/17.0.1/mpi:/glade/u/apps/ch/opt/mpt/2.22/bin:/glade/u/apps/ch/opt/ncarcompilers/0.5.0/intel/17.0.1:/glade/u/apps/opt/vncmgr:/glade/u/apps/opt/globus-utils:/glade/u/apps/ch/opt/usr/bin:/glade/u/apps/ch/opt/nano/4.3/gnu/8.3.0/bin:/glade/work/abanihi/softwares/miniconda3/bin:/glade/u/apps/opt/intel/2017u1/vtune_amplifier/bin64:/glade/u/apps/opt/intel/2017u1/inspector/bin64:/glade/u/apps/opt/intel/2017u1/advisor/bin64:/glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/bin/intel64:/glade/u/home/abanihi/go:/glade/work/abanihi/opt/miniconda/envs/playground/bin:/ncar/usr/jupyterhub.hpc.ucar.edu/jupyterhub-20211213/bin:/ncar/usr/jupyterhub.hpc.ucar.edu/jupyterhub-20211213/condabin:/usr/bin:/bin:/glade/u/apps/opt/hpss/hpss-client.5.0.2.p5/bin:/glade/u/apps/ch/os/usr/bin:/glade/u/apps/ch/opt/hpe-cpe/1.4.1/bin:/glade/u/apps/ch/opt/hpe-cpe/21.09/bin)
Should be fixed. @Anderson Banihirwe
Last updated: May 16 2025 at 17:14 UTC